PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.48EM9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 190aa    MW: 21313.4 Da    PI: 10.5787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.48EM9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
      Aradu.48EM9  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55
                     79***********************************9************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774161IPR017930Myb domain
SuperFamilySSF466892.32E-15268IPR009057Homeodomain-like
SMARTSM007174.1E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-13456IPR009057Homeodomain-like
PfamPF002491.5E-7555IPR001005SANT/Myb domain
CDDcd116601.14E-17657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLLLPA PKIDNNHMAL STAVRHDENV LETKPLAICG LSLPSHNSKQ  120
QLSRLERKLS ISYKPCKVTA NKTEAYGGYW QNNQGSEKRR YSSSTLLQEG RPRDSPEAEK  180
SHDVNILSKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600248.11e-72PREDICTED: MYB transcription factor MYB85 isoform X1
RefseqXP_006600250.11e-72PREDICTED: MYB transcription factor MYB85 isoform X2
SwissprotQ9FJW52e-40TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0R0JTI41e-72A0A0R0JTI4_SOYBN; Uncharacterized protein
STRINGGLYMA17G17370.15e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.26e-35MYB_related family protein